PoplarV1, Main, Exploration, bibRecord, 003625

Functional analysis of 5' untranslated region of a TIR-NBS-encoding gene from triploid white poplar.

Identifieur interne : 003625 ( Main/Exploration ); précédent : 003624; suivant : 003626

Functional analysis of 5' untranslated region of a TIR-NBS-encoding gene from triploid white poplar.

Auteurs : Huiquan Zheng [République populaire de Chine] ; Shanzhi Lin ; Qian Zhang ; Yang Lei ; Zhiyi Zhang

Source :

Molecular genetics and genomics : MGG [ 1617-4623 ] ; 2009.

RBID : pubmed:19618215

Descripteurs français

English descriptors

KwdEn :
- 5' Untranslated Regions (genetics), 5' Untranslated Regions (physiology), Amino Acid Sequence (MeSH), Cells, Cultured (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Plant (physiology), Glucuronidase (genetics), Molecular Sequence Data (MeSH), Nucleic Acid Conformation (MeSH), Plant Proteins (chemistry), Plant Proteins (genetics), Plants, Genetically Modified (genetics), Polyploidy (MeSH), Populus (genetics), Protein Structure, Tertiary (genetics), Rhizobium (cytology), Rhizobium (genetics), Sequence Analysis, DNA (MeSH), Sequence Homology, Amino Acid (MeSH), Tobacco (cytology), Tobacco (genetics), Transfection (MeSH).
MESH :
- chemical , chemistry : Plant Proteins.
- chemical , genetics : 5' Untranslated Regions, Glucuronidase, Plant Proteins.
- chemical , physiology : 5' Untranslated Regions.
- cytology : Rhizobium, Tobacco.
- genetics : Plants, Genetically Modified, Populus, Protein Structure, Tertiary, Rhizobium, Tobacco.
- physiology : Genes, Plant.
- Amino Acid Sequence, Cells, Cultured, Gene Expression Regulation, Plant, Molecular Sequence Data, Nucleic Acid Conformation, Polyploidy, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Transfection.

Abstract

Genome-wide analyses have identified a set of TIR-NBS-encoding genes in plants. However, the molecular mechanism underlying the expression of these genes is still unknown. In this study, we presented a TIR-NBS-encoding gene, PtDrl02, that displayed a low level of tissue-specific expression in a triploid white poplar [(Populus tomentosa x P. bolleana) x P. tomentosa], and analyzed the effects of the 5' untranslated region (UTR) on gene expression. The 5' UTR sequence repressed the reporter activity of beta-glucuronidase (GUS) gene under PtDrl02 promoter by 113.5-fold with a staining ratio of 2.97% in the transgenic tobacco plants. Quantitative RT-PCR assays revealed that the 5' UTR sequence decreased the transcript level of the GUS reporter gene by 13.3-fold, implying a regulatory role of 5' UTR in transcription and/or mRNA destabilization. The comparison of GUS activity with the transcript abundance indicated that the 5' UTR sequence decreased the translation efficiency of target gene by 88.3%. Additionally, the analysis of the transgenic P-985/UTRDelta/GUS plants showed that both the exon1 sequence and the leading intron within the 5' UTR region were responsible for the regulation of gene expression. Our results suggested a negative effect of the 5' UTR of PtDrl02 gene on gene expression.

DOI: 10.1007/s00438-009-0471-5
PubMed: 19618215

Affiliations:

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<front><div type="abstract" xml:lang="en">Genome-wide analyses have identified a set of TIR-NBS-encoding genes in plants. However, the molecular mechanism underlying the expression of these genes is still unknown. In this study, we presented a TIR-NBS-encoding gene, PtDrl02, that displayed a low level of tissue-specific expression in a triploid white poplar [(Populus tomentosa x P. bolleana) x P. tomentosa], and analyzed the effects of the 5' untranslated region (UTR) on gene expression. The 5' UTR sequence repressed the reporter activity of beta-glucuronidase (GUS) gene under PtDrl02 promoter by 113.5-fold with a staining ratio of 2.97% in the transgenic tobacco plants. Quantitative RT-PCR assays revealed that the 5' UTR sequence decreased the transcript level of the GUS reporter gene by 13.3-fold, implying a regulatory role of 5' UTR in transcription and/or mRNA destabilization. The comparison of GUS activity with the transcript abundance indicated that the 5' UTR sequence decreased the translation efficiency of target gene by 88.3%. Additionally, the analysis of the transgenic P-985/UTRDelta/GUS plants showed that both the exon1 sequence and the leading intron within the 5' UTR region were responsible for the regulation of gene expression. Our results suggested a negative effect of the 5' UTR of PtDrl02 gene on gene expression.</div>
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<Abstract><AbstractText>Genome-wide analyses have identified a set of TIR-NBS-encoding genes in plants. However, the molecular mechanism underlying the expression of these genes is still unknown. In this study, we presented a TIR-NBS-encoding gene, PtDrl02, that displayed a low level of tissue-specific expression in a triploid white poplar [(Populus tomentosa x P. bolleana) x P. tomentosa], and analyzed the effects of the 5' untranslated region (UTR) on gene expression. The 5' UTR sequence repressed the reporter activity of beta-glucuronidase (GUS) gene under PtDrl02 promoter by 113.5-fold with a staining ratio of 2.97% in the transgenic tobacco plants. Quantitative RT-PCR assays revealed that the 5' UTR sequence decreased the transcript level of the GUS reporter gene by 13.3-fold, implying a regulatory role of 5' UTR in transcription and/or mRNA destabilization. The comparison of GUS activity with the transcript abundance indicated that the 5' UTR sequence decreased the translation efficiency of target gene by 88.3%. Additionally, the analysis of the transgenic P-985/UTRDelta/GUS plants showed that both the exon1 sequence and the leading intron within the 5' UTR region were responsible for the regulation of gene expression. Our results suggested a negative effect of the 5' UTR of PtDrl02 gene on gene expression.</AbstractText>
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Functional analysis of 5' untranslated region of a TIR-NBS-encoding gene from triploid white poplar.

Functional analysis of 5' untranslated region of a TIR-NBS-encoding gene from triploid white poplar.

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